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Sample GSM880765 Query DataSets for GSM880765
Status Public on Feb 24, 2013
Title PT12 estrogen treated, replicate 2
Sample type RNA
 
Source name Tumor
Organism Homo sapiens
Characteristics xenograft: PT12
treatment: estrogen treated
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 500ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 3.5 ug of cDNA were hybridized for 20 hr at 48C on HuGene 1.1ST Array strip. GeneStrips were washed and stained in the Affymetrix Gene Atlas fluidics station.
Scan protocol GeneStrips were scanned using the Gene Atlas imaging station.
Description Human breast cancer was xenografted in NOD/SCID mice
Data processing The data were analyzed with Partek using RMA as normalization method.
 
Submission date Feb 24, 2012
Last update date Feb 24, 2013
Contact name peter kabos
E-mail(s) peter.kabos@ucdenver.edu
Organization name University of Colorado Denver
Department Medicine
Street address 12801 E. 17th Avenue
City Aurora
ZIP/Postal code 80045
Country USA
 
Platform ID GPL11532
Series (1)
GSE36075 Estrogen receptor dynamics in diverse patient-derived luminal breast cancer xenografts

Data table header descriptions
ID_REF
VALUE RMA values

Data table
ID_REF VALUE
7892501 4.46642
7892502 4.2587
7892503 2.47741
7892504 6.66084
7892505 2.0805
7892506 3.89608
7892507 4.23692
7892508 4.60201
7892509 9.34501
7892510 3.70972
7892511 2.24397
7892512 6.32849
7892513 4.42492
7892514 11.1195
7892515 7.02238
7892516 3.89233
7892517 6.46636
7892518 2.42475
7892519 4.47614
7892520 8.17776

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM880765_98-3_LT.ga.cel.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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