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Sample GSM880760 Query DataSets for GSM880760
Status Public on Feb 24, 2013
Title PE4 estrogen treated, replicate 3
Sample type RNA
 
Source name Tumor
Organism Homo sapiens
Characteristics xenograft: PE4
treatment: estrogen treated
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 500ng total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 3.5 ug of cDNA were hybridized for 20 hr at 48C on HuGene 1.1ST Array strip. GeneStrips were washed and stained in the Affymetrix Gene Atlas fluidics station.
Scan protocol GeneStrips were scanned using the Gene Atlas imaging station.
Description Human breast cancer was xenografted in NOD/SCID mice
Data processing The data were analyzed with Partek using RMA as normalization method.
 
Submission date Feb 24, 2012
Last update date Feb 24, 2013
Contact name peter kabos
E-mail(s) peter.kabos@ucdenver.edu
Organization name University of Colorado Denver
Department Medicine
Street address 12801 E. 17th Avenue
City Aurora
ZIP/Postal code 80045
Country USA
 
Platform ID GPL11532
Series (1)
GSE36075 Estrogen receptor dynamics in diverse patient-derived luminal breast cancer xenografts

Data table header descriptions
ID_REF
VALUE RMA values

Data table
ID_REF VALUE
7892501 4.07757
7892502 4.8065
7892503 2.17812
7892504 6.93672
7892505 2.60269
7892506 3.70132
7892507 4.42953
7892508 7.75124
7892509 10.0149
7892510 4.77744
7892511 4.17156
7892512 5.22702
7892513 3.40776
7892514 10.6845
7892515 7.49581
7892516 4.27168
7892517 5.92534
7892518 2.79895
7892519 4.49916
7892520 7.78776

Total number of rows: 33297

Table truncated, full table size 516 Kbytes.




Supplementary file Size Download File type/resource
GSM880760_66-6a_LT.ga.cel.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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