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| Status |
Public on Dec 09, 2005 |
| Title |
M-O7e SP1, chip HG-U133B |
| Sample type |
RNA |
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| Source name |
M-O7e cell line, Blood
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| Organism |
Homo sapiens |
| Characteristics |
Defining markers: GFP
|
| Treatment protocol |
Assays to confirm viability: 7AAD staining
|
| Growth protocol |
Growth medium: IMDM
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA prep method: RNeasy
Cell purification method: Cell sorting
Method for estimating purity: Reanalysis of sorted population by FACS-Vantage
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| Label |
Biotin
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| Description |
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Mickie Bhatia (mbhatia@robarts.ca; Box 5015; 100 Perth Drive) for analysis.
Stembase Experiment ID: E37
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=37
SCGP Sample ID: S51
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=37#SAMPLE_37
Short description: Total RNA from M-O7e, a megakaryoblastic cell line, transduced with Smad7 recombinant retroviral vector (MIEV-Smad7).
Estimated purity: ~ 98%
RNA concentration: 3.2 ug/ul
Num cells for RNA prep: 4x10e6 cells
Sample volume: 6.5 ul
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| Data processing |
Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
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| Submission date |
Dec 07, 2005 |
| Last update date |
Jan 19, 2006 |
| Organization |
Ottawa Hospital Research Institute |
| Phone |
(613) 737-8899 -73255
|
| Department |
Cellular and Molecular Medicine
|
| Lab |
Ottawa Bioinformatics Core Facility
|
| Street address |
501 Smyth Rd.
|
| City |
Ottawa |
| State/province |
ON |
| ZIP/Postal code |
K1H 8L6 |
| Country |
Canada |
| |
|
| Platform ID |
GPL97 |
| Series (1) |
| GSE3771 |
Role of Smad7 in Hematopoietic (M-O7e) and Non-Hematopoietic (PG13) Stem Cells |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06. |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
9647.52 |
P |
0.00110197 |
| AFFX-BioB-M_at |
23342.7 |
P |
0.000258358 |
| AFFX-BioB-3_at |
11346.8 |
P |
0.000296708 |
| AFFX-BioC-5_at |
22032.3 |
P |
9.4506e-05 |
| AFFX-BioC-3_at |
16301.7 |
P |
5.16732e-05 |
| AFFX-BioDn-5_at |
17426.9 |
P |
0.00010954 |
| AFFX-BioDn-3_at |
128828 |
P |
8.14279e-05 |
| AFFX-CreX-5_at |
187409 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
332550 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
551.846 |
A |
0.41138 |
| AFFX-DapX-M_at |
1026.01 |
A |
0.327079 |
| AFFX-DapX-3_at |
465.537 |
A |
0.760937 |
| AFFX-LysX-5_at |
473.335 |
A |
0.313723 |
| AFFX-LysX-M_at |
210.614 |
A |
0.834139 |
| AFFX-LysX-3_at |
932.053 |
A |
0.165861 |
| AFFX-PheX-5_at |
158.078 |
A |
0.737173 |
| AFFX-PheX-M_at |
145.354 |
A |
0.910522 |
| AFFX-PheX-3_at |
355.868 |
A |
0.804734 |
| AFFX-ThrX-5_at |
177.505 |
A |
0.868639 |
| AFFX-ThrX-M_at |
1052 |
A |
0.313723 |
Total number of rows: 22645
Table truncated, full table size 649 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM86532.CEL.gz |
3.3 Mb |
(ftp)(http) |
CEL |
| GSM86532.EXP.gz |
521 b |
(ftp)(http) |
EXP |
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