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Sample GSM862 Query DataSets for GSM862
Status Public on Feb 12, 2002
Title alpha factor release sample025
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 25
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n97
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 293 296 39 386 26 359 360 474 34 508 .895 0 -.198 .5 5 3 1.5 1.147 .667 .872 .661 1124 80 39 49 102 112 -.198
2 292 288 128 462 102 360 360 474 134 608 .933 0 .066 1.25 12 12 1.255 .955 .797 1.047 .684 920 80 39 49 112 122 .066
3 295 296 211 511 151 362 360 474 198 672 .974 0 -.092 .735 17 16 1.397 1.066 .716 .938 .643 831 80 39 49 122 132 -.092
4 296 296 159 498 138 361 360 474 181 655 .947 0 .187 1.111 15 17 1.152 .878 .868 1.138 .721 821 80 39 49 132 142 .187
5 297 296 276 762 402 360 360 474 529 1003 .94 0 .939 1.533 18 22 .687 .522 1.457 1.917 1.159 821 80 39 49 142 152 .939
6 299 296 184 496 136 360 360 474 179 653 .962 0 -.04 .579 17 17 1.353 1.028 .739 .973 .742 821 80 39 49 152 162 -.04
7 302 296 113 416 56 363 360 474 73 547 .893 0 -.63 .517 18 13 2.018 1.548 .496 .646 .519 831 80 39 49 162 172 -.63
8 307 304 1010 1379 1011 371 368 484 1330 1814 .966 0 .397 1.03 57 56 .999 .759 1.001 1.317 1.04 800 80 40 50 172 182 .397
9 316 312 64 416 40 380 376 495 52 547 .858 0 -.3 .688 17 10 1.6 1.231 .625 .813 .607 810 80 40 50 182 192 -.3
10 323 320 107 469 77 395 392 516 101 617 .935 0 -.083 .895 15 13 1.39 1.059 .72 .944 .769 815 80 40 50 192 202 -.083
11 348 336 186 598 190 440 408 537 250 787 .956 0 .427 1.057 26 26 .979 .744 1.022 1.344 .809 815 80 40 50 202 212 .427
12 356 336 228 675 267 445 408 537 351 888 .946 0 .622 1.5 23 32 .854 .65 1.171 1.539 .796 815 80 40 50 212 222 .622
13 359 344 52 481 65 449 416 547 86 633 .762 0 .726 2 10 11 .8 .605 1.25 1.654 .926 815 80 40 50 222 232 .726
14 365 336 45 444 36 449 408 537 47 584 .719 0 .063 .667 6 7 1.25 .957 .8 1.044 .802 815 80 40 50 232 242 .063
15 349 328 231 585 185 413 400 526 244 770 .925 0 .079 1.043 16 13 1.249 .947 .801 1.056 .69 815 80 40 50 242 252 .079
16 339 320 147 501 109 402 392 516 143 659 .964 0 -.04 .783 10 10 1.349 1.028 .741 .973 .736 821 80 40 50 252 262 -.04
17 335 312 156 514 130 398 384 505 171 676 .955 0 .132 1 16 16 1.2 .912 .833 1.096 .778 831 80 40 50 262 272 .132
18 325 312 99 435 51 388 384 505 67 572 .867 0 -.563 .814 15 13 1.941 1.478 .515 .677 .471 800 80 41 51 272 282 -.563
19 316 320 18185 552 168 381 384 505 221 726 0 0 -6.363 .009 60 31 108.244 82.285 .009 .012 0 810 80 41 51 282 292 -6.363
20 317 320 595 2429 2045 383 384 505 2691 3196 .927 0 2.177 3.434 50 62 .291 .221 3.437 4.523 2.872 815 80 41 51 292 302 2.177

Total number of rows: 7680

Table truncated, full table size 927 Kbytes.




Supplementary data files not provided
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