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Sample GSM856 Query DataSets for GSM856
Status Public on Feb 12, 2002
Title heat shock 15 min
Sample type RNA
 
Channel 1
Source name time zero
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 15 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y11n65
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL51
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 117 113 969 571 523 54 48 91 986 1077 .802 0 .025 .531 86 80 1.853 .983 .54 1.018 .552 1206 145 105 120 104 119 .025
2 117 113 188 159 114 62 45 85 215 300 .874 0 .194 .592 35 44 1.649 .874 .606 1.144 .514 1004 145 105 120 121 136 .194
3 111 107 1721 1126 1082 61 44 83 2042 2125 .894 0 .247 .628 76 81 1.591 .843 .629 1.187 .57 1026 145 105 120 138 153 .247
4 122 115 61 122 69 64 53 100 130 230 .482 0 1.092 1.217 14 24 .884 .469 1.131 2.131 .542 1040 145 105 120 156 171 1.092
5 134 117 1293 908 854 65 54 102 1611 1713 .887 0 .317 .666 71 77 1.514 .803 .66 1.246 .594 1049 145 105 120 173 188 .317
6 130 114 185 179 126 61 53 100 238 338 .838 0 .363 .684 17 24 1.468 .777 .681 1.286 .571 1000 145 106 121 191 206 .363
7 111 105 51 3 60 48 91 5 96 .094 0 .97 7 20 .087 998 145 106 121 208 223
8 109 104 2 47 65 51 96 89 .16 0 1 6 16 .156 1032 145 106 121 226 241
9 110 105 53 1 59 52 98 2 100 .056 0 .643 5 18 .049 1042 145 106 121 243 258
10 115 106 52 8 50 44 83 15 98 -.081 0 1.357 6 27 -.089 1052 145 106 121 261 276
11 124 108 50 6 56 44 83 11 94 .186 0 .966 3 22 .185 1018 145 107 122 278 293
12 121 107 57 12 56 45 85 23 108 .067 0 .917 11 32 .064 1032 145 107 122 296 311
13 113 104 46 1 52 45 85 2 87 .098 0 1.023 8 20 .076 1042 145 107 122 313 328
14 111 103 53 9 51 44 83 17 100 -.079 0 .935 6 29 -.085 1052 145 107 122 331 346
15 112 102 46 57 46 87 87 .166 0 .8 6 18 .146 1027 145 108 123 348 363
16 109 100 54 9 56 45 85 17 102 .057 0 1.614 2 26 .068 1037 145 108 123 366 381
17 101 98 46 3 50 43 81 6 87 .155 0 1.111 4 19 .135 1027 145 108 123 383 398
18 102 97 1 46 5 47 41 77 10 87 .102 0 3.322 1.133 9 21 .2 .1 5 10 .098 1040 145 108 123 401 416 3.322
19 101 96 23 46 39 74 43 .248 0 .892 4 9 .146 1049 145 108 123 418 433
20 100 96 8 62 28 44 34 64 53 117 -.004 0 2.728 .614 11 31 .286 .151 3.5 6.625 -.028 1017 145 109 124 436 451 2.728

Total number of rows: 9216

Table truncated, full table size 1088 Kbytes.




Supplementary data files not provided

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