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Sample GSM855056 Query DataSets for GSM855056
Status Public on Dec 28, 2012
Title Subject_5 [Illumina]
Sample type genomic
 
Source name Lymphoblast DNA
Organism Homo sapiens
Characteristics subject: Subject_5
phenotype: Control
Extracted molecule genomic DNA
Extraction protocol DNA isolated using cold protein precipitation (Lahiri and Schnabel, 1993)
Label Cy5 and Cy3
Label protocol Illumina standard protocol
 
Hybridization protocol Illumina standard protocol
Scan protocol Illumina standard protocol
Description Lymphoblast isolated from whole blood
Data processing Beta values were convereted to M-values using the Du et al.(2010) conversion then z-transformed (normalized data)
 
Submission date Dec 29, 2011
Last update date Dec 28, 2012
Contact name Jeffrey Plume
E-mail(s) jeffrey-plume@uiowa.edu
Organization name University of Iowa
Department Psychiatry
Lab Philibert
Street address 500 Newton Rd.
City Iowa City
State/province IA
ZIP/Postal code 52246
Country USA
 
Platform ID GPL13534
Series (2)
GSE34777 DNA methylation data from human lymphoblasts [Illumina]
GSE34779 A cross platform genome wide comparison of the relationship of promoter DNA methylation to gene expression

Data table header descriptions
ID_REF
VALUE M-values

Data table
ID_REF VALUE
cg10037654 0.08968
cg14057946 0.10808
cg11422233 0.12955
cg16047670 0.0943
cg18263059 0.08164
cg01014490 0.01653
cg04231937 0.04092
cg04496485 0.09376
cg08167039 0.0708
cg20677962 0.07411
cg06402284 0.25228
cg24699430 0.02226
cg01551879 0.02884
cg22394869 0.03023
cg02550592 0.02618
cg04485075 0.09151
cg16389252 0.09834
cg27430493 0.18979
cg25066040 0.04094
cg27060622 0.0774

Total number of rows: 98090

Table truncated, full table size 1808 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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