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Sample GSM8547647 Query DataSets for GSM8547647
Status Public on Oct 08, 2024
Title spinal cord, scar resection3
Sample type SRA
 
Source name spinal cord
Organism Rattus norvegicus
Characteristics tissue: spinal cord
treatment: Scar resection + PBS
time: 7weeks after SCI
Extracted molecule total RNA
Extraction protocol The total RNA was extracted using the RNeasy Mini Kit (Qiagen)
 The RNA from each sample was purified, and the mRNA libraries were prepared following the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina, San Diego, CA, United States) protocol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description 328_S3_R1_001
Data processing Raw reads were trimmed for quality and read length using Trimmomatic 0.38.
Transcript counts were obtained using StringTie version 2.1.3b.
Assembly: rn6
Supplementary files format and content: raw counts for each sample
Supplementary files format and content: TPM values for each sample
 
Submission date Oct 01, 2024
Last update date Oct 08, 2024
Contact name Keitaro Ito
E-mail(s) keitaro0518@gmail.com
Organization name Keio university
Street address iwatocho5-1-903
City Shinjuku-ku
State/province Tokyo
ZIP/Postal code 162-0832
Country Japan
 
Platform ID GPL18694
Series (1)
GSE278491 The effects of scar resection in chronic complete spinal cord injury(SCI) and the effects of scar resection combined with decellularized hydrogel (scaffold)
Relations
BioSample SAMN44006707
SRA SRX26248609

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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