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Sample GSM852316 Query DataSets for GSM852316
Status Public on Dec 22, 2011
Title NA_CON_1Y_2
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: mixed
age: 1
disease state: NORM
treatment: CON
pool id: E
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.787995818
cg00000108 3.985816948
cg00000109 2.586218248
cg00000165 -1.128543701
cg00000236 2.86401627
cg00000289 0.891613069
cg00000292 3.626926723
cg00000321 -1.109729379
cg00000363 -0.666048283
cg00000622 -5.60842758
cg00000658 2.475232708
cg00000714 -0.850486224
cg00000721 3.778459279
cg00000734 -2.842897466
cg00000769 -4.092316922
cg00000807 3.17926404
cg00000884 2.694653868
cg00000905 -2.252284459
cg00000924 0.005949017
cg00000948 3.228937837

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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