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Sample GSM852315 Query DataSets for GSM852315
Status Public on Dec 22, 2011
Title NA_CON_1Y_1
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: female
age: 1
disease state: NORM
treatment: CON
pool id: D
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.725584676
cg00000108 4.024604091
cg00000109 3.010480827
cg00000165 -1.144696642
cg00000236 2.893781874
cg00000289 0.835940197
cg00000292 3.491909812
cg00000321 -1.301296116
cg00000363 -0.435523179
cg00000622 -5.598768823
cg00000658 2.326785562
cg00000714 -0.924662978
cg00000721 3.652390323
cg00000734 -3.03340821
cg00000769 -4.610244436
cg00000807 3.108804963
cg00000884 2.74223224
cg00000905 -2.309712713
cg00000924 0.100764203
cg00000948 3.940576411

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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