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Sample GSM852314 Query DataSets for GSM852314
Status Public on Dec 22, 2011
Title NA_CON__CB_3
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: NORM
treatment: CON
pool id: F
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.958302033
cg00000108 3.855257145
cg00000109 3.116449019
cg00000165 -1.377564
cg00000236 2.934466479
cg00000289 1.716389388
cg00000292 3.339472156
cg00000321 -1.430113953
cg00000363 -0.915156244
cg00000622 -5.752457194
cg00000658 2.394079915
cg00000714 -0.556753889
cg00000721 3.347535323
cg00000734 -3.062470003
cg00000769 -4.201084083
cg00000807 2.824805595
cg00000884 2.738898812
cg00000905 -2.723816001
cg00000924 0.113994539
cg00000948 3.428504152

Total number of rows: 462176

Table truncated, full table size 10532 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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