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Sample GSM852312 Query DataSets for GSM852312
Status Public on Dec 22, 2011
Title NA_CON__CB_1
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: female
age: 0
disease state: NORM
treatment: CON
pool id: D
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.338890213
cg00000108 4.212156326
cg00000109 2.764357908
cg00000165 -1.166372451
cg00000236 2.986149464
cg00000289 1.208656857
cg00000292 3.563402784
cg00000321 -1.402734129
cg00000363 -0.964379582
cg00000622 -5.378075286
cg00000658 2.27515934
cg00000714 -0.758439417
cg00000721 3.887161087
cg00000734 -2.945685572
cg00000769 -4.499856542
cg00000807 3.731360313
cg00000884 2.77694686
cg00000905 -2.585580962
cg00000924 0.091813948
cg00000948 3.014539763

Total number of rows: 462176

Table truncated, full table size 10533 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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