NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM852311 Query DataSets for GSM852311
Status Public on Dec 22, 2011
Title FA_CON_1Y_3
Sample type genomic
 
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: male
age: 1
disease state: FOOD ALLERGY
treatment: CON
pool id: C
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
 
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
 
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
E-mail(s) david.martino@telethonkids.org.au
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
City NEDLANDS
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
cg00000029 1.466942705
cg00000108 3.231975158
cg00000109 3.020762691
cg00000165 -1.220840021
cg00000236 2.534672616
cg00000289 0.919469224
cg00000292 3.598621945
cg00000321 -1.040391138
cg00000363 -0.659315854
cg00000622 -5.569337924
cg00000658 2.605075534
cg00000714 -0.714060137
cg00000721 3.758698742
cg00000734 -2.987030366
cg00000769 -4.258724896
cg00000807 3.164408866
cg00000884 2.993665588
cg00000905 -2.441580822
cg00000924 0.052354238
cg00000948 3.413000786

Total number of rows: 462176

Table truncated, full table size 10529 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap