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Sample GSM852309 Query DataSets for GSM852309
Status Public on Dec 22, 2011
Title FA_CON_1Y_1
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: mixed
age: 1
disease state: FOOD ALLERGY
treatment: CON
pool id: A
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.071299654
cg00000108 3.533283568
cg00000109 2.414531398
cg00000165 -0.758191941
cg00000236 2.63046962
cg00000289 0.798892207
cg00000292 3.838028972
cg00000321 -1.52290014
cg00000363 -0.502027927
cg00000622 -5.105548359
cg00000658 2.41223514
cg00000714 -0.815605996
cg00000721 3.569404321
cg00000734 -2.835382519
cg00000769 -4.206302262
cg00000807 2.9886558
cg00000884 2.681592093
cg00000905 -2.515137319
cg00000924 0.068053885
cg00000948 3.533716836

Total number of rows: 462176

Table truncated, full table size 10530 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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