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Sample GSM852308 Query DataSets for GSM852308
Status Public on Dec 22, 2011
Title FA_CON_CB_3
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: male
age: 0
disease state: FOOD ALLERGY
treatment: CON
pool id: C
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.735408622
cg00000108 3.518195841
cg00000109 2.833763152
cg00000165 -1.262538336
cg00000236 2.3268898
cg00000289 1.161409318
cg00000292 3.499100266
cg00000321 -0.772669006
cg00000363 -0.700906239
cg00000622 -5.662454618
cg00000658 2.44662828
cg00000714 -0.202229583
cg00000721 3.265161236
cg00000734 -2.955080692
cg00000769 -4.34831478
cg00000807 2.703432782
cg00000884 2.787715235
cg00000905 -2.331406741
cg00000924 0.135108171
cg00000948 3.147552317

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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