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Sample GSM852307 Query DataSets for GSM852307
Status Public on Dec 22, 2011
Title FA_CON_CB_2
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: male
age: 0
disease state: FOOD ALLERGY
treatment: CON
pool id: B
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.807774939
cg00000108 3.958829851
cg00000109 3.595203516
cg00000165 -1.586392099
cg00000236 2.957869533
cg00000289 1.647441754
cg00000292 3.990558959
cg00000321 -0.832653573
cg00000363 -0.830018373
cg00000622 -5.426253061
cg00000658 2.297575806
cg00000714 -0.386105497
cg00000721 3.880592161
cg00000734 -2.892717328
cg00000769 -4.459674613
cg00000807 3.146183515
cg00000884 2.818761964
cg00000905 -2.442012623
cg00000924 -0.067213963
cg00000948 3.670912716

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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