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Sample GSM852306 Query DataSets for GSM852306
Status Public on Dec 22, 2011
Title FA_CON_CB_1
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: FOOD ALLERGY
treatment: CON
pool id: A
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.08022206
cg00000108 4.397560538
cg00000109 3.043770764
cg00000165 -1.576064876
cg00000236 2.437283448
cg00000289 1.638813572
cg00000292 3.965926607
cg00000321 -1.077060957
cg00000363 -0.535625489
cg00000622 -6.191134287
cg00000658 2.796269826
cg00000714 -0.52635349
cg00000721 3.471345488
cg00000734 -2.842836229
cg00000769 -4.722387297
cg00000807 3.433450873
cg00000884 2.970457429
cg00000905 -2.693163387
cg00000924 0.040866074
cg00000948 3.462199262

Total number of rows: 462176

Table truncated, full table size 10532 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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