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Sample GSM852305 Query DataSets for GSM852305
Status Public on Dec 22, 2011
Title NA_CD3_1Y_6
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: male
age: 1
disease state: NORM
treatment: CD3
pool id: L
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.734015681
cg00000108 4.263199252
cg00000109 2.747604745
cg00000165 -1.374023634
cg00000236 2.683815759
cg00000289 1.278280479
cg00000292 3.300797308
cg00000321 -0.858415838
cg00000363 -0.647859859
cg00000622 -5.564857448
cg00000658 1.756813027
cg00000714 -0.796177802
cg00000721 3.270339087
cg00000734 -3.000034896
cg00000769 -4.352614628
cg00000807 3.631744114
cg00000884 2.426664988
cg00000905 -2.403427988
cg00000924 0.000485043
cg00000948 3.402217992

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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