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Sample GSM852304 Query DataSets for GSM852304
Status Public on Dec 22, 2011
Title NA_CD3_1Y_5
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: female
age: 1
disease state: NORM
treatment: CD3
pool id: K
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.772210909
cg00000108 3.942056825
cg00000109 2.075231955
cg00000165 0.003077104
cg00000236 2.134920921
cg00000289 0.552168317
cg00000292 3.712325328
cg00000321 -0.82693832
cg00000363 -0.05681129
cg00000622 -5.818517048
cg00000658 2.203733988
cg00000714 -0.798500898
cg00000721 3.293568235
cg00000734 -3.024762545
cg00000769 -4.161150689
cg00000807 2.440821868
cg00000884 2.950646077
cg00000905 -2.338050554
cg00000924 0.286424967
cg00000948 3.163880632

Total number of rows: 462176

Table truncated, full table size 10530 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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