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Sample GSM852302 Query DataSets for GSM852302
Status Public on Dec 22, 2011
Title NA_CD3__CB_6
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: male
age: 0
disease state: NORM
treatment: CD3
pool id: L
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.783442225
cg00000108 3.922681342
cg00000109 2.934475631
cg00000165 -1.276825187
cg00000236 2.843840671
cg00000289 1.306468006
cg00000292 3.660430843
cg00000321 -0.626608403
cg00000363 -0.956779657
cg00000622 -5.596555808
cg00000658 2.010376303
cg00000714 -0.468898411
cg00000721 3.487130311
cg00000734 -3.017566659
cg00000769 -4.247547796
cg00000807 3.488668135
cg00000884 3.633101356
cg00000905 -2.563661463
cg00000924 -0.082841261
cg00000948 3.937598809

Total number of rows: 462176

Table truncated, full table size 10533 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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