GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM852300 Query DataSets for GSM852300
Status Public on Dec 22, 2011
Title NA_CD3__CB_4
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: NORM
treatment: CD3
pool id: J
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.836025585
cg00000108 3.638217793
cg00000109 3.069482197
cg00000165 -1.271023054
cg00000236 2.714293847
cg00000289 1.035548967
cg00000292 3.416579477
cg00000321 -0.975537497
cg00000363 -0.786571606
cg00000622 -5.372699129
cg00000658 2.322625448
cg00000714 -0.42910222
cg00000721 3.595313655
cg00000734 -2.909860047
cg00000769 -4.243971789
cg00000807 3.174005767
cg00000884 2.378654041
cg00000905 -2.623681712
cg00000924 -0.056120748
cg00000948 3.406242696

Total number of rows: 462176

Table truncated, full table size 10533 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap