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Sample GSM852298 Query DataSets for GSM852298
Status Public on Dec 22, 2011
Title FA_CD3_1Y_5
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: male
age: 1
disease state: FOOD ALLERGY
treatment: CD3
pool id: H
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.587444752
cg00000108 3.279890746
cg00000109 2.35308151
cg00000165 -1.165956655
cg00000236 2.482918967
cg00000289 1.026100969
cg00000292 3.434831496
cg00000321 -0.725116108
cg00000363 -0.836607641
cg00000622 -5.373329888
cg00000658 2.209518731
cg00000714 -0.832434775
cg00000721 3.795684261
cg00000734 -3.010949661
cg00000769 -4.330159383
cg00000807 3.028610825
cg00000884 2.749109814
cg00000905 -2.668878776
cg00000924 0.1721223
cg00000948 3.382579091

Total number of rows: 462176

Table truncated, full table size 10530 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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