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Sample GSM852296 Query DataSets for GSM852296
Status Public on Dec 22, 2011
Title FA_CD3__CB_6
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: FOOD ALLERGY
treatment: CD3
pool id: I
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 1.755070117
cg00000108 3.76312558
cg00000109 3.589401982
cg00000165 -1.402838916
cg00000236 2.790470751
cg00000289 1.84349982
cg00000292 3.723888116
cg00000321 -1.229224014
cg00000363 -0.749286826
cg00000622 -5.382674587
cg00000658 2.414290876
cg00000714 -0.506744162
cg00000721 3.921807295
cg00000734 -3.030069567
cg00000769 -4.474167652
cg00000807 3.360994828
cg00000884 2.827653731
cg00000905 -2.467275363
cg00000924 0.22810834
cg00000948 3.808848532

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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