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Sample GSM852290 Query DataSets for GSM852290
Status Public on Dec 22, 2011
Title NA_CD3__CB_3
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: NORM
treatment: CD3
pool id: F
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.06550117
cg00000108 3.74293318
cg00000109 3.105994841
cg00000165 -1.298623679
cg00000236 3.034838614
cg00000289 1.395245952
cg00000292 3.298422217
cg00000321 -1.124387688
cg00000363 -0.709203991
cg00000622 -5.698358639
cg00000658 2.422248437
cg00000714 -0.401359688
cg00000721 3.64387763
cg00000734 -3.041482982
cg00000769 -4.445812271
cg00000807 3.565754683
cg00000884 3.451152328
cg00000905 -2.478398157
cg00000924 -0.411746376
cg00000948 3.843537482

Total number of rows: 462176

Table truncated, full table size 10532 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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