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Sample GSM852289 Query DataSets for GSM852289
Status Public on Dec 22, 2011
Title NA_CD3__CB_2
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: NORM
treatment: CD3
pool id: E
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.007262538
cg00000108 4.028032903
cg00000109 2.642699637
cg00000165 -1.156175188
cg00000236 2.845757242
cg00000289 1.26345504
cg00000292 3.354787401
cg00000321 -0.816333711
cg00000363 -0.67948011
cg00000622 -5.739932791
cg00000658 2.585152831
cg00000714 -0.451134083
cg00000721 3.536512304
cg00000734 -2.956724272
cg00000769 -4.581754452
cg00000807 3.17884835
cg00000884 2.806281003
cg00000905 -2.500989278
cg00000924 0.159843289
cg00000948 3.793659774

Total number of rows: 462176

Table truncated, full table size 10531 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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