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Sample GSM852288 Query DataSets for GSM852288
Status Public on Dec 22, 2011
Title NA_CD3__CB_1
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: female
age: 0
disease state: NORM
treatment: CD3
pool id: D
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.163992104
cg00000108 3.86874457
cg00000109 2.711899346
cg00000165 -1.172869993
cg00000236 3.032931196
cg00000289 1.200556769
cg00000292 3.299750757
cg00000321 -1.35127195
cg00000363 -0.612324412
cg00000622 -5.481626088
cg00000658 2.332463153
cg00000714 -0.66132778
cg00000721 3.875647098
cg00000734 -3.264147168
cg00000769 -4.350521035
cg00000807 2.839927437
cg00000884 2.443599524
cg00000905 -2.426137855
cg00000924 0.127878996
cg00000948 3.508985033

Total number of rows: 462176

Table truncated, full table size 10532 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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