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Sample GSM852286 Query DataSets for GSM852286
Status Public on Dec 22, 2011
Title FA_CD3_1Y_2
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: 12m CD4+
gender: male
age: 1
disease state: FOOD ALLERGY
treatment: CD3
pool id: B
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description 12m CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.052659011
cg00000108 3.583374932
cg00000109 3.795498995
cg00000165 -0.851468455
cg00000236 2.783221524
cg00000289 1.092156247
cg00000292 3.441586103
cg00000321 -0.877974954
cg00000363 -0.990940098
cg00000622 -5.498277426
cg00000658 2.139725506
cg00000714 -0.843595811
cg00000721 3.405230129
cg00000734 -2.934456834
cg00000769 -4.337757365
cg00000807 2.902118385
cg00000884 3.457707063
cg00000905 -2.149925853
cg00000924 -0.039864402
cg00000948 3.65961897

Total number of rows: 462176

Table truncated, full table size 10530 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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