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Sample GSM852282 Query DataSets for GSM852282
Status Public on Dec 22, 2011
Title FA_CD3__CB_1
Sample type genomic
Source name gDNA from CD4+ cells
Organism Homo sapiens
Characteristics cell type: neonatal CD4+
gender: mixed
age: 0
disease state: FOOD ALLERGY
treatment: CD3
pool id: A
Treatment protocol Anti-CD3 (0.5ug/mL) + rhIL2 (20Units) or UNTREATED
Growth protocol cells cultured for 24 hours in AIM-V media + 2Mercapto ethanol (serum free)
Extracted molecule genomic DNA
Extraction protocol DNA and RNA co purified from source according to Qiagen all prep kit protocol
Label Cy5 and Cy3
Label protocol Cy5 and Cy3
Hybridization protocol Infinium Methylation Assay according to manufacturers protocol (Illumina)
Scan protocol iScan system
Description neonatal CD4+
Data processing Genome studio v2010.3 with Methylation Module v1.8.5 under default settings
Submission date Dec 21, 2011
Last update date Dec 22, 2011
Contact name David Martino
Phone 0863191635
Organization name Telethon Kids Institute
Street address Perth Childrens Hospital, 15 Hospital Avenue
State/province Western Australia
ZIP/Postal code 6009
Country Australia
Platform ID GPL13534
Series (1)
GSE34639 Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12).

Data table header descriptions
VALUE quantile normalized signal intensity

Data table
cg00000029 2.587847843
cg00000108 4.22390783
cg00000109 3.04227541
cg00000165 0.351967561
cg00000236 3.13986214
cg00000289 0.76619109
cg00000292 3.315744772
cg00000321 -0.514475602
cg00000363 0.051267038
cg00000622 -5.459368059
cg00000658 2.259753676
cg00000714 -0.564937019
cg00000721 4.284480533
cg00000734 -1.680550423
cg00000769 -3.878410909
cg00000807 3.994938683
cg00000884 2.990116435
cg00000905 -2.252357799
cg00000924 -0.40475812
cg00000948 3.216628562

Total number of rows: 462176

Table truncated, full table size 10532 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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