NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM851305 Query DataSets for GSM851305
Status Public on Jul 01, 2012
Title RenLab-H3K4me1-intestine
Sample type SRA
 
Source name Mouse intestine
Organism Mus musculus
Characteristics strain: C57Bl/6
antibody: Abcam, ab8895
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description H3K4me1 IP
Data processing fastq: Illumina's Genome Analyzer Pipeline
bowtie files: Alignment to mm9 using Bowtie with a seed length of 32 bases and up to 2 mismatches. Only sequences mapping to exactly one location were kept.
ELAND files: Alignment to mm9 using ELAND with a seed length of 25 bases and up to 2 mismatches. Only sequences mapping to exactly one location were used for further analysis.
 
Submission date Dec 20, 2011
Last update date May 15, 2019
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL13112
Series (2)
GSE29184 A draft map of cis-regulatory sequences in the mouse genome
GSE29218 A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq]
Relations
SRA SRX112955
BioSample SAMN00768129

Supplementary file Size Download File type/resource
GSM851305_RenLab-H3K4me1-intestine-DM377.bowtie.gz 289.8 Mb (ftp)(http) BOWTIE
GSM851305_RenLab-H3K4me1-intestine-DM592.bowtie.gz 595.4 Mb (ftp)(http) BOWTIE
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap