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Sample GSM847572 Query DataSets for GSM847572
Status Public on Jan 18, 2012
Title PREC_1
Sample type genomic
Source name PrEC cells
Organism Homo sapiens
Characteristics tissue: prostate
cell line: PrEC
Treatment protocol Native DNA was used
Growth protocol 37 deg C with 5% CO2
Extracted molecule genomic DNA
Extraction protocol DNA was extracted using the QIAamp Mini Kit (Qiagen) following manufacturers instructions.
Label Cy5 and Cy3
Label protocol According to manufacturer's protocol.
Hybridization protocol According to manufacturer's protocol.
Scan protocol According to manufacturer's protocol.
Description Sample name: 6264509024_R04C02
Data processing R/Bioconductor 'minfi' package, with default parameters {RG.raw <- read.450k.exp(base = slide.folder, targets = files.table); methyl.norm <- preprocessIllumina(RG.raw, bg.correct = TRUE, normalize = controls); beta.table <- getBeta(methyl.norm)}, to generate beta values
Submission date Dec 12, 2011
Last update date Jan 18, 2012
Contact name Mark Robinson
Organization name University of Zuerich
Department Institute of Molecular Life Sciences
Street address Winterthurerstrasse 190
City Zuerich
ZIP/Postal code 8057
Country Switzerland
Platform ID GPL13534
Series (2)
GSE34340 Bisulphite sequencing of native LNCaP and PrEC DNA [methylation array]
GSE34403 Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA

Data table header descriptions
VALUE Beta values

Data table
cg00050873 0.836893363
cg00212031 0
cg00213748 0.927731092
cg00214611 0.023870675
cg00455876 0.808123998
cg01707559 0.028138528
cg02004872 0
cg02011394 0.976147952
cg02050847 0.978605008
cg02233190 0.005121171
cg02494853 0.0062462
cg02839557 0.00817416
cg02842889 0.00896535
cg03052502 0.992191454
cg03155755 0.855759923
cg03244189 0.059542796
cg03443143 0.91150266
cg03683899 0.006892895
cg03695421 0.77764277
cg03706273 0.022034429

Total number of rows: 485577

Table truncated, full table size 10786 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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