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Sample GSM846 Query DataSets for GSM846
Status Public on Feb 12, 2002
Title YPD 1 d (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 1 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a76
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 65 57 90 66 28 44 38 51 38 89 .82 0 -1.244 .304 57 37 3.214 2.368 .311 .422 .466 1164 177 78 93 92 107 -1.244
2 98 59 621 562 522 67 40 54 705 759 .958 0 .183 .899 66 71 1.19 .881 .841 1.135 .763 928 177 78 93 110 125 .183
3 96 58 30 56 16 66 40 54 22 76 .722 -100 .636 31 30 1.875 1.364 .533 .733 .297 906 177 78 93 127 142 -.447
4 90 58 819 736 696 68 40 54 941 995 .957 0 .2 .892 54 66 1.177 .87 .85 1.149 .779 941 177 77 92 145 160 .2
5 91 59 2001 2181 2140 69 41 55 2892 2947 .963 0 .531 1.089 85 93 .935 .692 1.069 1.445 .948 928 177 77 92 163 178 .531
6 66 56 295 317 277 48 40 54 374 428 .935 0 .342 .785 32 41 1.065 .789 .939 1.268 .808 919 177 77 92 180 195 .342
7 66 53 4 42 4 50 38 51 6 57 .204 0 .585 .676 25 23 1 .667 1 1.5 .139 915 177 77 92 198 213 .585
8 64 52 9 39 1 47 38 51 2 53 .057 -100 .571 24 22 9 4.5 .111 .222 .037 928 177 76 91 215 230 -2.17
9 82 54 8 41 6 49 35 47 8 55 .241 -100 .696 27 30 1.333 1 .75 1 .142 932 177 76 91 233 248 0
10 91 54 3 39 4 54 35 47 6 53 .164 0 1 .491 23 25 .75 .5 1.333 2 .124 915 177 76 91 251 266 1
11 96 53 11 42 7 60 35 47 10 57 .194 0 -.138 .619 31 29 1.571 1.1 .636 .909 .14 896 177 76 91 268 283 -.138
12 98 52 10 36 1 53 35 47 2 49 .239 -100 .568 28 23 10 5 .1 .2 .134 928 177 75 90 286 301 -2.322
13 82 54 36 1 44 35 47 2 49 .198 -100 .804 14 21 .125 919 177 75 90 303 318
14 65 53 35 1 43 34 46 1 47 .044 -100 .514 20 23 .031 919 177 75 90 321 336
15 63 53 1 33 1 40 32 43 2 45 .095 -100 .765 17 22 1 .5 1 2 .068 906 177 75 90 339 354 1
16 57 50 10 34 4 36 30 41 5 46 .072 -100 .455 29 23 2.5 2 .4 .5 .046 928 177 74 89 356 371 -1
17 60 52 25 35 29 39 34 -.179 -100 1.12 15 15 -.091 919 177 74 89 374 389
18 61 54 30 1 34 29 39 2 41 .001 -100 .6 19 25 .001 906 177 74 89 391 406
19 56 51 31 1 33 30 41 1 42 -.023 -100 .833 22 23 -.017 941 177 73 88 409 424
20 58 51 9 33 4 35 29 39 6 45 .004 0 -.585 .792 27 23 2.25 1.5 .444 .667 .002 937 177 73 88 427 442 -.585

Total number of rows: 9216

Table truncated, full table size 1072 Kbytes.




Supplementary data files not provided
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