|
Status |
Public on Jul 31, 2024 |
Title |
TCR P4.Day5 |
Sample type |
SRA |
|
|
Source name |
CSF
|
Organism |
Homo sapiens |
Characteristics |
tissue: CSF cell type: CD45+
|
Extracted molecule |
total RNA |
Extraction protocol |
10x Genomics Chromium single-cell preparation NGS Illumina Next Seq
|
|
|
Library strategy |
OTHER |
Library source |
transcriptomic |
Library selection |
other |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
total RNA + tVDJ
|
Data processing |
Illumina bcl2fastq software used for basecalling UMI count matrices and VDJ output generated using the Cellranger count and vdj pipelines 6.0.0 Assembly: hg38 Supplementary files format and content: gzipped folder containing cellranger generated barcodes, features, and matrix files Supplementary files format and content: gzipped folder containing cellranger generated filtered contig annotations for tVDJ Library strategy: 5' RNAseq + VDJ
|
|
|
Submission date |
Jul 30, 2024 |
Last update date |
Jul 31, 2024 |
Contact name |
Jonathan Kipnis |
Organization name |
Washington University in Saint Louis
|
Department |
Pathology and Immunology
|
Lab |
Kipnis Lab
|
Street address |
4515 McKinley Ave
|
City |
Saint Louis |
State/province |
MO |
ZIP/Postal code |
63110 |
Country |
USA |
|
|
Platform ID |
GPL18573 |
Series (2) |
GSE216391 |
Engineered T cell therapy for central nervous system injury |
GSE273504 |
Engineered T cell therapy for central nervous system injury [CSF RNAseq + VDJ] |
|
Relations |
BioSample |
SAMN42924988 |
SRA |
SRX25516996 |