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Sample GSM8430307 Query DataSets for GSM8430307
Status Public on Jul 31, 2024
Title RNA-Seq P5.Day3
Sample type SRA
 
Source name CSF
Organism Homo sapiens
Characteristics tissue: CSF
cell type: CD45+
Extracted molecule total RNA
Extraction protocol 10x Genomics Chromium single-cell preparation
NGS Illumina Next Seq
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NextSeq 500
 
Description total RNA + tVDJ
Data processing Illumina bcl2fastq software used for basecalling
UMI count matrices and VDJ output generated using the Cellranger count and vdj pipelines 6.0.0
Assembly: hg38
Supplementary files format and content: gzipped folder containing cellranger generated barcodes, features, and matrix files
Supplementary files format and content: gzipped folder containing cellranger generated filtered contig annotations for tVDJ
Library strategy: 5' RNAseq + VDJ
 
Submission date Jul 30, 2024
Last update date Jul 31, 2024
Contact name Jonathan Kipnis
Organization name Washington University in Saint Louis
Department Pathology and Immunology
Lab Kipnis Lab
Street address 4515 McKinley Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL18573
Series (2)
GSE216391 Engineered T cell therapy for central nervous system injury
GSE273504 Engineered T cell therapy for central nervous system injury [CSF RNAseq + VDJ]
Relations
BioSample SAMN42924998
SRA SRX25516986

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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