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Sample GSM843 Query DataSets for GSM843
Status Public on Feb 12, 2002
Title YPD 4 h (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 4 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a73
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 182 166 106 77 26 57 51 39 20 58 .554 0 -2.432 .279 47 35 4.077 5.397 .245 .185 .2 1174 156 57 71 102 116 -2.432
2 251 179 902 1786 1734 172 52 39 1310 1349 .879 0 .538 1.82 48 57 .52 .689 1.922 1.452 1.73 986 156 57 71 119 133 .538
3 315 163 70 14 323 56 42 11 53 .529 -100 .75 12 24 .332 988 156 57 71 137 151
4 238 133 632 1224 1174 217 50 38 887 925 .859 0 .489 1.235 58 62 .538 .713 1.858 1.403 1.723 986 156 57 71 154 168 .489
5 199 133 2448 4546 4495 121 51 39 3395 3434 0 0 .472 1.819 93 96 .545 .721 1.836 1.387 0 988 156 57 71 172 186 .472
6 215 150 489 1039 984 121 55 42 743 785 .796 0 .604 1.836 40 54 .497 .658 2.012 1.52 1.603 986 156 57 71 189 203 .604
7 187 158 12 61 3 80 58 44 2 46 .11 -100 .438 18 18 4 5.295 .25 .189 .043 988 156 57 71 207 221 -2.405
8 190 159 14 63 6 75 57 43 5 48 -.029 -100 .519 14 24 2.333 3.089 .429 .324 -.011 986 156 57 71 224 238 -1.627
9 183 153 10 70 13 71 57 43 10 53 .086 -100 .706 13 28 .769 1.018 1.3 .982 .061 988 156 57 71 242 256 -.026
10 218 148 55 192 59 45 -3 42 .054 -100 .889 7 12 .034 986 156 57 71 259 273
11 203 136 59 225 59 45 0 45 .124 -100 .652 7 16 .071 988 156 57 71 277 291
12 168 133 14 60 5 121 55 42 4 45 .048 -100 .395 16 15 2.8 3.707 .357 .27 .02 986 156 57 71 294 308 -1.89
13 164 141 59 1 103 58 44 1 45 .357 -100 .6 10 14 .101 988 156 57 71 312 326
14 157 136 14 54 92 58 44 -3 41 .161 -100 .596 16 11 .045 986 156 57 71 329 343
15 164 133 53 101 55 42 -2 40 -.039 -100 .351 10 12 -.021 988 156 57 71 347 361
16 158 129 6 53 95 54 41 -1 40 -.044 -100 .917 11 16 -.032 976 156 57 71 364 378
17 147 127 4 52 59 52 39 0 39 .25 -100 .405 10 16 .106 966 156 57 71 382 396
18 132 119 6 59 9 55 50 38 7 45 .173 -100 1.095 12 23 .667 .883 1.5 1.133 .08 956 156 57 71 399 413 .18
19 137 121 47 62 48 36 -1 36 .159 -100 .38 14 16 .066 958 156 57 71 417 431
20 135 121 34 53 7 65 46 35 5 40 .403 -100 .5 11 25 4.857 6.43 .206 .156 .031 956 156 57 71 434 448 -2.685

Total number of rows: 9216

Table truncated, full table size 1083 Kbytes.




Supplementary data files not provided
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