 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jul 30, 2024 |
| Title |
MDA-MB-468 inerferrred with specific siRNA oligo against TBC1D7 replica 3 |
| Sample type |
SRA |
| |
|
| Source name |
MDA-MB-468
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MDA-MB-468
treatment: siRNA oligo against TBC1D7
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted from MDA-MB-468 cells using the Maxwell RSC miRNA Tissue kit (Promega, AS1460) with the Maxwell RSC Instrument (Promega, AS4500)
RNAseq libraries were prepared with the TruSeq Stranded Total RNA kit from Illumina (San Diego, CA, USA)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
gene_id,expected_count,TPM,FPKM
|
| Data processing |
Assembly: GCF_000001405.39_GRCh38.p13
The estimation of gene expression abundance was carried out using RSEM (version 1.3.3) with default parameters
Supplementary files format and content: gene_id, expected_count, TPM, FPKM
|
| |
|
| Submission date |
Jul 29, 2024 |
| Last update date |
Jul 30, 2024 |
| Contact name |
Stefano Confalonieri |
| E-mail(s) |
stefano.confalonieri@ieo.it
|
| Phone |
+39 02 94372755
|
| Organization name |
IEO, European Institute of Oncology IRCCS, Via Ripamonti 435, 20141, Milan, Italy.
|
| Department |
Department of Experimental Oncology
|
| Street address |
Via Adamello 16
|
| City |
Milano |
| ZIP/Postal code |
20139 |
| Country |
Italy |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE273321 |
TBC1 domain-containing proteins are frequently involved in triple-negative breast cancers in connection with the induction of a glycolytic phenotype |
|
| Relations |
| BioSample |
SAMN42892718 |
| SRA |
SRX25501085 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8426396_sictr_3.genes.results.gz |
250.1 Kb |
(ftp)(http) |
RESULTS |
SRA Run Selector |
| Raw data are available in SRA |
|
|
|
|
 |
