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Sample GSM840951 Query DataSets for GSM840951
Status Public on Nov 30, 2011
Title HepG2_Stearic acid_rep4
Sample type RNA
Source name HepG2, Stearic acid, 7 days
Organism Homo sapiens
Characteristics cell line: HepG2
incubated fatty acid: Stearic acid
Treatment protocol Incubation for seven days with 100 µM fatty acid (oleic, elaidic or stearic acid)
Extracted molecule total RNA
Extraction protocol Total RNA Purification Kit (NORGEN BIOTEK CORPORATION) Distribubed by Phalanx Biotech
Label Cy5
Label protocol RNA was converted to double-stranded cDNA and amplified using an in vitro transcription reaction that included aminoallyl-UTP, and the aRNA product was conjugated with Cy5T NHS ester
Hybridization protocol Fragmented aRNA was hybridized at 42° C overnight using the HybBag mixing system with 1× OneArray Hybridization Buffer (Phalanx Biotech), 0.01 mg/mL sheared salmon sperm DNA (Promega) and 0.025 mg/mL labeled target. After hybridization, the arrays were washed according to the OneArray protocol
Scan protocol Raw intensity signals from each microarray were captured using a Molecular Dynamics™ Axon 4100A scanner, measured using GenePixPro™ Software, and stored in GPR format
Description SD
raw data file technical rep1: H031-0607002930.gpr
raw data file technical rep2: H032-0607002931.gpr
Data processing The data from all microarrays in each experimental set were passed to Rosetta Resolver (Rosetta Biosoftware) for analysis. Testing was performed by combining the technical replicates and performing statistical analyses using Rosetta Resolver's proprietary modeling techniques
Submission date Nov 30, 2011
Last update date Nov 30, 2011
Contact name Toke Krogager Hansen
Organization name Aarhus University
Department Molecular Biology
Lab Proteome analysis
Street address gustav wieds vej 10c
City Aarhus
ZIP/Postal code 8000
Country Denmark
Platform ID GPL6254
Series (1)
GSE34045 Identification of a biomarker panel for the intake of the common dietary trans fat elaidic acid (trans∆9-C18:1)

Data table header descriptions
VALUE Normalized signal Intensity calculated by Rosetta Resolver

Data table
PH_hs_0000002 188.214249
PH_hs_0000003 15.9393396
PH_hs_0000004 236.326965
PH_hs_0000005 1.2084707
PH_hs_0000006 1041.21838
PH_hs_0000007 656.626831
PH_hs_0000008 69.4660187
PH_hs_0000009 108.824738
PH_hs_0000010 3773.20581
PH_hs_0000011 146.346588
PH_hs_0000012 548.424316
PH_hs_0000013 555.179199
PH_hs_0000014 1027.49634
PH_hs_0000015 3401.25732
PH_hs_0000016 2867.2583
PH_hs_0000017 226.698196
PH_hs_0000018 60.3907928
PH_hs_0000019 5.90045595
PH_hs_0000020 7918.58008
PH_hs_0000021 170.732758

Total number of rows: 30968

Table truncated, full table size 754 Kbytes.

Supplementary file Size Download File type/resource
GSM840951_H031-0607002930.gpr.gz 2.7 Mb (ftp)(http) GPR
GSM840951_H032-0607002931.gpr.gz 2.7 Mb (ftp)(http) GPR
Processed data included within Sample table

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