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Sample GSM840940 Query DataSets for GSM840940
Status Public on Nov 30, 2011
Title HepG2_Oleic acid_rep1
Sample type RNA
Source name HepG2, Oleic acid, 7 days
Organism Homo sapiens
Characteristics cell line: HepG2
incubated fatty acid: Oleic acid
Treatment protocol Incubation for seven days with 100 µM fatty acid (oleic, elaidic or stearic acid)
Extracted molecule total RNA
Extraction protocol Total RNA Purification Kit (NORGEN BIOTEK CORPORATION) Distribubed by Phalanx Biotech
Label Cy5
Label protocol RNA was converted to double-stranded cDNA and amplified using an in vitro transcription reaction that included aminoallyl-UTP, and the aRNA product was conjugated with Cy5T NHS ester
Hybridization protocol Fragmented aRNA was hybridized at 42° C overnight using the HybBag mixing system with 1× OneArray Hybridization Buffer (Phalanx Biotech), 0.01 mg/mL sheared salmon sperm DNA (Promega) and 0.025 mg/mL labeled target. After hybridization, the arrays were washed according to the OneArray protocol
Scan protocol Raw intensity signals from each microarray were captured using a Molecular Dynamics™ Axon 4100A scanner, measured using GenePixPro™ Software, and stored in GPR format
Description OA
raw data file technical rep1: H009-0607008690.gpr
raw data file technical rep2: H010-0607008693.gpr
Data processing The data from all microarrays in each experimental set were passed to Rosetta Resolver (Rosetta Biosoftware) for analysis. Testing was performed by combining the technical replicates and performing statistical analyses using Rosetta Resolver's proprietary modeling techniques
Submission date Nov 30, 2011
Last update date Nov 30, 2011
Contact name Toke Krogager Hansen
Organization name Aarhus University
Department Molecular Biology
Lab Proteome analysis
Street address gustav wieds vej 10c
City Aarhus
ZIP/Postal code 8000
Country Denmark
Platform ID GPL6254
Series (1)
GSE34045 Identification of a biomarker panel for the intake of the common dietary trans fat elaidic acid (trans∆9-C18:1)

Data table header descriptions
VALUE Normalized signal Intensity calculated by Rosetta Resolver

Data table
PH_hs_0000002 125.982208
PH_hs_0000003 5.87435913
PH_hs_0000004 9.41923046
PH_hs_0000005 5.05144215
PH_hs_0000006 675.437378
PH_hs_0000007 146.491821
PH_hs_0000008 17.6104164
PH_hs_0000009 13.5338135
PH_hs_0000010 774.30127
PH_hs_0000011 75.9235535
PH_hs_0000012 239.291504
PH_hs_0000013 224.770187
PH_hs_0000014 264.763947
PH_hs_0000015 1721.13647
PH_hs_0000016 482.29248
PH_hs_0000017 43.1208344
PH_hs_0000018 12.9767628
PH_hs_0000019 17.9902248
PH_hs_0000020 1012.37738
PH_hs_0000021 34.0434303

Total number of rows: 30968

Table truncated, full table size 754 Kbytes.

Supplementary file Size Download File type/resource
GSM840940_H009-0607008690.gpr.gz 2.6 Mb (ftp)(http) GPR
GSM840940_H010-0607008693.gpr.gz 2.6 Mb (ftp)(http) GPR
Processed data included within Sample table

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