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Sample GSM840313 Query DataSets for GSM840313
Status Public on Dec 23, 2013
Title Normal N2 sty
Sample type genomic
 
Source name whole blood DNA extraction
Organism Homo sapiens
Characteristics sample type: normal reference
tissue: blood
Extracted molecule genomic DNA
Extraction protocol QiaAmp DNA Blood Kit
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
Description Hybridized to 250K_Sty
Data processing The CEL-Files were analyzed using the BRLMM-algorithm to produce genotype calls, stored in the corresponding CHP-Files.
 
Submission date Nov 29, 2011
Last update date Dec 23, 2013
Contact name Rene Scholtysik
E-mail(s) rene.scholtysik@uni-due.de
Organization name University Hospital Essen
Department IFZ
Street address Virchowstrasse 173
City Essen
ZIP/Postal code 45127
Country Germany
 
Platform ID GPL3720
Series (1)
GSE34005 Affymetrix SNP array data for recurrent deletion in 19p in DLBCLs and BLs

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1 Relative allele signal for the data in the first probe group
RAS2 Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL

Data table
ID_REF VALUE CONFIDENCE RAS1 RAS2 P-VALUE AA P-VALUE AB P-VALUE BB P-VALUE NO CALL
AFFX-5Q-123 No Call 479.5 0 0 0 0 0 0
AFFX-5Q-456 No Call 460.5 0 0 0 0 0 0
AFFX-5Q-789 No Call 843 0 0 0 0 0 0
AFFX-5Q-ABC No Call 1286.5 0 0 0 0 0 0
AFFX-barcodeA No Call 229.5 0 0 0 0 0 0
AFFX-barcodeB No Call 497.5 0 0 0 0 0 0
AFFX-barcodeC No Call 110.5 0 0 0 0 0 0
AFFX-barcodeD No Call 108.5 0 0 0 0 0 0
AFFX-barcodeE No Call 137 0 0 0 0 0 0
AFFX-barcodeF No Call 159 0 0 0 0 0 0
AFFX-barcodeG No Call 193.5 0 0 0 0 0 0
AFFX-barcodeH No Call 161 0 0 0 0 0 0
AFFX-barcodeI No Call 218.5 0 0 0 0 0 0
AFFX-barcodeJ No Call 218 0 0 0 0 0 0
AFFX-barcodeK No Call 163 0 0 0 0 0 0
AFFX-barcodeL No Call 135 0 0 0 0 0 0
AFFX-barcodeM No Call 166 0 0 0 0 0 0
AFFX-barcodeN No Call 283 0 0 0 0 0 0
AFFX-barcodeO No Call 146.5 0 0 0 0 0 0
AFFX-barcodeP No Call 228 0 0 0 0 0 0

Total number of rows: 238378

Table truncated, full table size 18499 Kbytes.




Supplementary file Size Download File type/resource
GSM840313.CEL.gz 26.3 Mb (ftp)(http) CEL
GSM840313.CHP.gz 3.8 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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