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Sample GSM840305 Query DataSets for GSM840305
Status Public on Dec 23, 2013
Title Tumor MPI-032 sty
Sample type genomic
 
Source name Whole tissue of tumor biopsy
Organism Homo sapiens
Characteristics sample type: tumor
tissue: tumor
disease state: aggressive B-cell lymphoma
Extracted molecule genomic DNA
Extraction protocol QiaAmp DNA Blood Kit
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
Description Hybridized to 250K_Sty
Data processing The CEL-Files were analyzed using the BRLMM-algorithm to produce genotype calls, stored in the corresponding CHP-Files.
 
Submission date Nov 29, 2011
Last update date Dec 23, 2013
Contact name Rene Scholtysik
E-mail(s) rene.scholtysik@uni-due.de
Organization name University Hospital Essen
Department IFZ
Street address Virchowstrasse 173
City Essen
ZIP/Postal code 45127
Country Germany
 
Platform ID GPL3720
Series (1)
GSE34005 Affymetrix SNP array data for recurrent deletion in 19p in DLBCLs and BLs

Data table header descriptions
ID_REF
VALUE Genotypes: AA, AB, BB, No Call
CONFIDENCE
RAS1 Relative allele signal for the data in the first probe group
RAS2 Relative allele signal for the data in the second probe group
P-VALUE AA
P-VALUE AB
P-VALUE BB
P-VALUE NO CALL

Data table
ID_REF VALUE CONFIDENCE RAS1 RAS2 P-VALUE AA P-VALUE AB P-VALUE BB P-VALUE NO CALL
AFFX-5Q-123 No Call 438.5 0 0 0 0 0 0
AFFX-5Q-456 No Call 331.5 0 0 0 0 0 0
AFFX-5Q-789 No Call 767.5 0 0 0 0 0 0
AFFX-5Q-ABC No Call 1136 0 0 0 0 0 0
AFFX-barcodeA No Call 231.5 0 0 0 0 0 0
AFFX-barcodeB No Call 346.5 0 0 0 0 0 0
AFFX-barcodeC No Call 75 0 0 0 0 0 0
AFFX-barcodeD No Call 109.5 0 0 0 0 0 0
AFFX-barcodeE No Call 100 0 0 0 0 0 0
AFFX-barcodeF No Call 99 0 0 0 0 0 0
AFFX-barcodeG No Call 113.5 0 0 0 0 0 0
AFFX-barcodeH No Call 115.5 0 0 0 0 0 0
AFFX-barcodeI No Call 167 0 0 0 0 0 0
AFFX-barcodeJ No Call 129.5 0 0 0 0 0 0
AFFX-barcodeK No Call 114 0 0 0 0 0 0
AFFX-barcodeL No Call 135.5 0 0 0 0 0 0
AFFX-barcodeM No Call 106 0 0 0 0 0 0
AFFX-barcodeN No Call 187.5 0 0 0 0 0 0
AFFX-barcodeO No Call 106.5 0 0 0 0 0 0
AFFX-barcodeP No Call 138 0 0 0 0 0 0

Total number of rows: 238378

Table truncated, full table size 18581 Kbytes.




Supplementary file Size Download File type/resource
GSM840305.CEL.gz 26.0 Mb (ftp)(http) CEL
GSM840305.CHP.gz 3.8 Mb (ftp)(http) CHP
Processed data provided as supplementary file
Processed data included within Sample table

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