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Status |
Public on Dec 23, 2013 |
Title |
Tumor MPI-024 sty |
Sample type |
genomic |
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Source name |
Whole tissue of tumor biopsy
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Organism |
Homo sapiens |
Characteristics |
sample type: tumor tissue: tumor disease state: aggressive B-cell lymphoma
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Extracted molecule |
genomic DNA |
Extraction protocol |
QiaAmp DNA Blood Kit
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Label |
Biotin
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Label protocol |
As per manufacturer (Affymetrix)
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Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
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Scan protocol |
The Arrays were washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
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Description |
Hybridized to 250K_Sty
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Data processing |
The CEL-Files were analyzed using the BRLMM-algorithm to produce genotype calls, stored in the corresponding CHP-Files.
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Submission date |
Nov 29, 2011 |
Last update date |
Dec 23, 2013 |
Contact name |
Rene Scholtysik |
E-mail(s) |
rene.scholtysik@uni-due.de
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Organization name |
University Hospital Essen
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Department |
IFZ
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Street address |
Virchowstrasse 173
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City |
Essen |
ZIP/Postal code |
45127 |
Country |
Germany |
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Platform ID |
GPL3720 |
Series (1) |
GSE34005 |
Affymetrix SNP array data for recurrent deletion in 19p in DLBCLs and BLs |
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Data table header descriptions |
ID_REF |
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VALUE |
Genotypes: AA, AB, BB, No Call |
CONFIDENCE |
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RAS1 |
Relative allele signal for the data in the first probe group |
RAS2 |
Relative allele signal for the data in the second probe group |
P-VALUE AA |
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P-VALUE AB |
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P-VALUE BB |
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P-VALUE NO CALL |
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Data table |
ID_REF |
VALUE |
CONFIDENCE |
RAS1 |
RAS2 |
P-VALUE AA |
P-VALUE AB |
P-VALUE BB |
P-VALUE NO CALL |
AFFX-5Q-123 |
No Call |
509.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-5Q-456 |
No Call |
538.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-5Q-789 |
No Call |
1003.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-5Q-ABC |
No Call |
1446 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeA |
No Call |
218.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeB |
No Call |
426.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeC |
No Call |
112 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeD |
No Call |
125 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeE |
No Call |
153.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeF |
No Call |
158 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeG |
No Call |
177.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeH |
No Call |
163 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeI |
No Call |
181 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeJ |
No Call |
140 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeK |
No Call |
121 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeL |
No Call |
136.5 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeM |
No Call |
125 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeN |
No Call |
197 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeO |
No Call |
144 |
0 |
0 |
0 |
0 |
0 |
0 |
AFFX-barcodeP |
No Call |
172.5 |
0 |
0 |
0 |
0 |
0 |
0 |
Total number of rows: 238378
Table truncated, full table size 18589 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM840303.CEL.gz |
26.9 Mb |
(ftp)(http) |
CEL |
GSM840303.CHP.gz |
3.8 Mb |
(ftp)(http) |
CHP |
Processed data provided as supplementary file |
Processed data included within Sample table |
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