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Sample GSM838684 Query DataSets for GSM838684
Status Public on Dec 01, 2011
Title WT Reverse crosslink 6hr IFNg BMM
Sample type SRA
 
Source name bone marrow macrophages
Organism Mus musculus
Characteristics genotype: Ikbke+/+
cell type: Bone marrow macrophages
chip antibody: none
treatment: IFN╬│ for 6 hour
genetic background: C58BL/6
Growth protocol Bone marrow from Ikbke+/+ and Ikbke-/- mice was isolated, differentiated into macrophages with macrophage colony-stimulating factor (M-CSF), and either untreated or treated with IFNb or IFNg for six hours before crosslinking for chromatin isolation.
Extracted molecule genomic DNA
Extraction protocol Standard Illumina library construction
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Description Input control for IP
Data processing STAT1 binding sites were identified with the program MACS, using the corresponding reverse cross-link sample as a control.
mm9
 
Submission date Nov 23, 2011
Last update date May 15, 2019
Contact name Jason Gertz
E-mail(s) jgertz@hudsonalpha.com
Organization name HudsonAlpha Institute
Street address 601 Genome Way
City Huntsville
State/province AL
ZIP/Postal code 35806
Country USA
 
Platform ID GPL11002
Series (1)
GSE33913 IKK-epsilon regulates the balance between the type I and type II interferon responses
Relations
SRA SRX109332
BioSample SAMN00760836

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data not applicable for this record

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