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Status |
Public on Jun 23, 2024 |
Title |
DGP2_MeLN_Post-treatment controller_RNA |
Sample type |
SRA |
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Source name |
MeLN
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Organism |
Macaca mulatta |
Characteristics |
tissue: MeLN cell line: primary cells cell type: CM9 specific CD8
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Treatment protocol |
Cells sorted from chronically infected Rhesus Macaques
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Extracted molecule |
total RNA |
Extraction protocol |
10x Genomics pipeline
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq X |
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Description |
RNA
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Data processing |
Demultiplexing CellRanger Seurat Assembly: Rhesus Macaque Supplementary files format and content: For RNAseq: files are filtered barcodes, features and matrix Supplementary files format and content: For TCRseq: files are filtered contig anotations
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Submission date |
Jun 18, 2024 |
Last update date |
Jun 23, 2024 |
Contact name |
Jennifer Simpson |
E-mail(s) |
jen.simpson@nih.gov
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Organization name |
NIAID
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Street address |
4 Center Drive
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City |
Bethesda |
State/province |
MD |
ZIP/Postal code |
20892 |
Country |
USA |
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Platform ID |
GPL34625 |
Series (1) |
GSE270230 |
Single cell, multiomic analysis of SIV specific CD8 T cells from multiple anatomical sites |
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Relations |
BioSample |
SAMN41886320 |
SRA |
SRX24960799 |
Supplementary file |
Size |
Download |
File type/resource |
GSM8337606_DGP2_MeLN_barcodes.tsv.gz |
83.4 Kb |
(ftp)(http) |
TSV |
GSM8337606_DGP2_MeLN_features.tsv.gz |
185.6 Kb |
(ftp)(http) |
TSV |
GSM8337606_DGP2_MeLN_matrix.mtx.gz |
93.7 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
Raw data are available in SRA |
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