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Sample GSM8337606 Query DataSets for GSM8337606
Status Public on Jun 23, 2024
Title DGP2_MeLN_Post-treatment controller_RNA
Sample type SRA
 
Source name MeLN
Organism Macaca mulatta
Characteristics tissue: MeLN
cell line: primary cells
cell type: CM9 specific CD8
Treatment protocol Cells sorted from chronically infected Rhesus Macaques
Extracted molecule total RNA
Extraction protocol 10x Genomics pipeline
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq X
 
Description RNA
Data processing Demultiplexing
CellRanger
Seurat
Assembly: Rhesus Macaque
Supplementary files format and content: For RNAseq: files are filtered barcodes, features and matrix
Supplementary files format and content: For TCRseq: files are filtered contig anotations
 
Submission date Jun 18, 2024
Last update date Jun 23, 2024
Contact name Jennifer Simpson
E-mail(s) jen.simpson@nih.gov
Organization name NIAID
Street address 4 Center Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL34625
Series (1)
GSE270230 Single cell, multiomic analysis of SIV specific CD8 T cells from multiple anatomical sites
Relations
BioSample SAMN41886320
SRA SRX24960799

Supplementary file Size Download File type/resource
GSM8337606_DGP2_MeLN_barcodes.tsv.gz 83.4 Kb (ftp)(http) TSV
GSM8337606_DGP2_MeLN_features.tsv.gz 185.6 Kb (ftp)(http) TSV
GSM8337606_DGP2_MeLN_matrix.mtx.gz 93.7 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA

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