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Sample GSM8308918 Query DataSets for GSM8308918
Status Public on Jun 10, 2024
Title RNA-Seq of mus musculus:Embryo 8
Sample type SRA
 
Source name Embryo
Organism Mus musculus
Characteristics tissue: Embryo
strain: C57BL/6J
age: E13.5
Sex: Female
Extracted molecule polyA RNA
Extraction protocol Tissue was permeabilized with tissue permeabilizing enzyme for 12 minutes
RNA libraries for RNA-seq were prepared using Kapa HIFI HotStart ReadyMix PCR Kit following manufacturer's protocols.
 
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NovaSeq 6000
 
Description Well-ST-seq_30_5
Well-ST-seq_30 resolution
Data processing *library strategy: Well-ST-seq
The filtered data was mapped to the mouse genome (mm10 mouse) using SpaceRanger V1.1.0.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files
 
Submission date Jun 06, 2024
Last update date Jun 10, 2024
Contact name Zhengyang Jin
E-mail(s) jinzy21@mails.jlu.edu.cn
Organization name Jilin University
Street address No. 1163 Xinmin Street
City Changchun
State/province Jilin
ZIP/Postal code 130021
Country China
 
Platform ID GPL24247
Series (1)
GSE247834 Well-ST-seq: cost-effective and cellular level spatial transcriptomics with high RNA capture efficiency
Relations
BioSample SAMN41693721
SRA SRX24815202

Supplementary file Size Download File type/resource
GSM8308918_Well-ST-seq_30_5_barcodes.tsv.gz 5.5 Kb (ftp)(http) TSV
GSM8308918_Well-ST-seq_30_5_features.tsv.gz 245.4 Kb (ftp)(http) TSV
GSM8308918_Well-ST-seq_30_5_matrix.mtx.gz 6.1 Mb (ftp)(http) MTX
GSM8308918_Well-ST-seq_30_5_spatial.tar.gz 1.5 Mb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA

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