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Sample GSM8308916 Query DataSets for GSM8308916
Status Public on Jun 10, 2024
Title RNA-Seq of mus musculus:Embryo 6
Sample type SRA
Source name Embryo
Organism Mus musculus
Characteristics tissue: Embryo
strain: C57BL/6J
age: E13.5
Sex: Female
Extracted molecule polyA RNA
Extraction protocol Tissue was permeabilized with tissue permeabilizing enzyme for 12 minutes
RNA libraries for RNA-seq were prepared using Kapa HIFI HotStart ReadyMix PCR Kit following manufacturer's protocols.
Library strategy OTHER
Library source transcriptomic
Library selection other
Instrument model Illumina NovaSeq 6000
Description Well-ST-seq_30_3
Well-ST-seq_30 resolution
Data processing *library strategy: Well-ST-seq
The filtered data was mapped to the mouse genome (mm10 mouse) using SpaceRanger V1.1.0.
Assembly: mm10
Supplementary files format and content: Tab-separated values files and matrix files
Submission date Jun 06, 2024
Last update date Jun 10, 2024
Contact name Zhengyang Jin
Organization name Jilin University
Street address No. 1163 Xinmin Street
City Changchun
State/province Jilin
ZIP/Postal code 130021
Country China
Platform ID GPL24247
Series (1)
GSE247834 Well-ST-seq: cost-effective and cellular level spatial transcriptomics with high RNA capture efficiency
BioSample SAMN41693719
SRA SRX24815200

Supplementary file Size Download File type/resource
GSM8308916_Well-ST-seq_30_3_barcodes.tsv.gz 7.7 Kb (ftp)(http) TSV
GSM8308916_Well-ST-seq_30_3_features.tsv.gz 245.4 Kb (ftp)(http) TSV
GSM8308916_Well-ST-seq_30_3_matrix.mtx.gz 9.2 Mb (ftp)(http) MTX
GSM8308916_Well-ST-seq_30_3_spatial.tar.gz 1.5 Mb (ftp)(http) TAR
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Raw data are available in SRA

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