|
| Status |
Public on Sep 15, 2024 |
| Title |
CB22 |
| Sample type |
SRA |
| |
|
| Source name |
Control_blister_22
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: suction skin blister fluid
|
| Extracted molecule |
total RNA |
| Extraction protocol |
inDrop protocol as described by Zilionis et al. and Gellatly et al. (https://pubmed.ncbi.nlm.nih.gov/27929523/, https://pubmed.ncbi.nlm.nih.gov/34516831/).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
NextSeq 550 |
| |
|
| Description |
Illumina NextSeq550, NextSeq2000, NovaSeq6000. (See meta.data.tsv for cell source)
|
| Data processing |
https://github.com/garber-lab/inDrop_Processing
Assembly: hg38_v34
Supplementary files format and content: 10x format with additional `meta.data.tsv` containing single cell metadata available on series record.
Supplementary files format and content: 10x file format for each individual, available on sample record.
|
| |
|
| Submission date |
May 20, 2024 |
| Last update date |
Sep 15, 2024 |
| Contact name |
Michael Frisoli |
| Organization name |
University of Massachusetts Chan Medical School
|
| Department |
Dermatology
|
| Lab |
John Harris Laboratory
|
| Street address |
364 Plantation St.
|
| City |
Worcester |
| State/province |
Massachusetts |
| ZIP/Postal code |
01605 |
| Country |
USA |
| |
|
| Platform ID |
GPL21697 |
| Series (1) |
| GSE267929 |
Single cell RNA-sequencing reveals molecular signatures that distinguish allergic from irritant contact dermatitis |
|
