|
| Status |
Public on Apr 30, 2024 |
| Title |
AP7354 |
| Sample type |
SRA |
| |
|
| Source name |
Primary mouse hepatocytes
|
| Organism |
Mus musculus |
| Characteristics |
cell type: Primary mouse hepatocytes
condition: ΔEGFR
treatment: CCl4
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated from cells by RNA STAT 60
KAPA Stranded mRNA-Seq Illumina® Platforms Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
RNA-seq reads were mapped using STAR aligner version 2.7.8a. Annotated genes from GENCODE version M31 were quantified with RSEM version 1.3.0.
Assembly: GRCm39
Supplementary files format and content: RSEM output (tab-delimited file)
|
| |
|
| Submission date |
Apr 26, 2024 |
| Last update date |
Apr 30, 2024 |
| Contact name |
Isabel Fabregat |
| E-mail(s) |
ifabregat@idibell.cat
|
| Organization name |
Bellvitge Biomedical Research Institute - IDIBELL
|
| Department |
Oncobell Program
|
| Lab |
TGF beta and cancer group
|
| Street address |
Avinguda de la Granvia de l’Hospitalet, 199
|
| City |
L'Hospitalet de Llobregat |
| State/province |
Barcelona |
| ZIP/Postal code |
08908 |
| Country |
Spain |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE265969 |
EGFR pathway regulates the cellular interactome within the liver fibrotic niche |
|
| Relations |
| BioSample |
SAMN41092989 |
| SRA |
SRX24377307 |
