|
Status |
Public on Apr 30, 2024 |
Title |
AP7347 |
Sample type |
SRA |
|
|
Source name |
Primary mouse hepatocytes
|
Organism |
Mus musculus |
Characteristics |
cell type: Primary mouse hepatocytes condition: WT treatment: CCl4
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was isolated from cells by RNA STAT 60 KAPA Stranded mRNA-Seq Illumina® Platforms Kit
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
RNA-seq reads were mapped using STAR aligner version 2.7.8a. Annotated genes from GENCODE version M31 were quantified with RSEM version 1.3.0. Assembly: GRCm39 Supplementary files format and content: RSEM output (tab-delimited file)
|
|
|
Submission date |
Apr 26, 2024 |
Last update date |
Apr 30, 2024 |
Contact name |
Isabel Fabregat |
E-mail(s) |
ifabregat@idibell.cat
|
Organization name |
Bellvitge Biomedical Research Institute - IDIBELL
|
Department |
Oncobell Program
|
Lab |
TGF beta and cancer group
|
Street address |
Avinguda de la Granvia de l’Hospitalet, 199
|
City |
L'Hospitalet de Llobregat |
State/province |
Barcelona |
ZIP/Postal code |
08908 |
Country |
Spain |
|
|
Platform ID |
GPL24247 |
Series (1) |
GSE265969 |
EGFR pathway regulates the cellular interactome within the liver fibrotic niche |
|
Relations |
BioSample |
SAMN41092995 |
SRA |
SRX24377300 |