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Sample GSM8238373 Query DataSets for GSM8238373
Status Public on Apr 30, 2024
Title AP7347
Sample type SRA
 
Source name Primary mouse hepatocytes
Organism Mus musculus
Characteristics cell type: Primary mouse hepatocytes
condition: WT
treatment: CCl4
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cells by RNA STAT 60
KAPA Stranded mRNA-Seq Illumina® Platforms Kit
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing RNA-seq reads were mapped using STAR aligner version 2.7.8a. Annotated genes from GENCODE version M31 were quantified with RSEM version 1.3.0.
Assembly: GRCm39
Supplementary files format and content: RSEM output (tab-delimited file)
 
Submission date Apr 26, 2024
Last update date Apr 30, 2024
Contact name Isabel Fabregat
E-mail(s) ifabregat@idibell.cat
Organization name Bellvitge Biomedical Research Institute - IDIBELL
Department Oncobell Program
Lab TGF beta and cancer group
Street address Avinguda de la Granvia de l’Hospitalet, 199
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL24247
Series (1)
GSE265969 EGFR pathway regulates the cellular interactome within the liver fibrotic niche
Relations
BioSample SAMN41092995
SRA SRX24377300

Supplementary file Size Download File type/resource
GSM8238373_AP7347.genes.results.gz 1.3 Mb (ftp)(http) RESULTS
SRA Run SelectorHelp
Raw data are available in SRA

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