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Sample GSM822298 Query DataSets for GSM822298
Status Public on Oct 25, 2011
Title UT-A_ChipSeq_HUVEC_c-Myc
Sample type SRA
 
Source name HUVEC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
treatment: None
treatment description: No special treatment or protocol applies
antibody antibodydescription: Rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: MYC
antibody targetdescription: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-764
controlid: wgEncodeEH000550
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.01,fseq v 1.84, iff_HUVEC
antibody: c-Myc
antibody antibodydescription: rabbit polyclonal to amino acids 1-262 of c-Myc human origin
antibody targetdescription: transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-764
controlid: HUVEC/Input
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider Lonza
Growth protocol HUVEC_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
 
Submission date Oct 25, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE33213 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSM1002656
SRA SRX102997
BioSample SAMN00744167
Named Annotation GSM822298_hg19_wgEncodeOpenChromChipHuvecCmycBaseOverlapSignal.bigWig
Named Annotation GSM822298_hg19_wgEncodeOpenChromChipHuvecCmycSig.bigWig

Supplementary file Size Download File type/resource
GSM822298_hg19_wgEncodeOpenChromChipHuvecCmycBaseOverlapSignal.bigWig 102.2 Mb (ftp)(http) BIGWIG
GSM822298_hg19_wgEncodeOpenChromChipHuvecCmycPk.narrowPeak.gz 931.9 Kb (ftp)(http) NARROWPEAK
GSM822298_hg19_wgEncodeOpenChromChipHuvecCmycSig.bigWig 2.9 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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