GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM822295 Query DataSets for GSM822295
Status Public on Oct 25, 2011
Title UT-A_ChipSeq_MCF-7_Pol2
Sample type SRA
Source name MCF-7
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
treatment: None
treatment description: No special treatment or protocol applies
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
controlid: wgEncodeEH000589
labversion: v 1,fseq v 1.84, iff_MCF7,p-value cutoff: 0.05
replicate: 1,2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
controlid: MCF-7/Input
labversion: v 1
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 25, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE33213 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX102994
BioSample SAMN00744164
Named Annotation GSM822295_hg19_wgEncodeOpenChromChipMcf7Pol2BaseOverlapSignal.bigWig
Named Annotation GSM822295_hg19_wgEncodeOpenChromChipMcf7Pol2Sig.bigWig

Supplementary file Size Download File type/resource
GSM822295_hg19_wgEncodeOpenChromChipMcf7Pol2BaseOverlapSignal.bigWig 383.2 Mb (ftp)(http) BIGWIG
GSM822295_hg19_wgEncodeOpenChromChipMcf7Pol2PkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM822295_hg19_wgEncodeOpenChromChipMcf7Pol2Sig.bigWig 1.5 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap