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Sample GSM816635 Query DataSets for GSM816635
Status Public on Oct 14, 2011
Title Duke_DnaseSeq_NHEK
Sample type SRA
 
Source name NHEK
Organism Homo sapiens
Characteristics datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
controlid: generic_female
labversion: baseAlignCounts.pl v 1,1% ENCODE array platform validation tests,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
cell organism: human
cell description: epidermal keratinocytes
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
treatment: None
treatment description: No special treatment or protocol applies
controlid: generic_female
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider Lonza
Treatment protocol None
Growth protocol Keratinocyte_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Submission date Oct 13, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSM1002658
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX100893
BioSample SAMN00739104
Named Annotation GSM816635_hg19_wgEncodeOpenChromDnaseNhekBaseOverlapSignal.bigWig
Named Annotation GSM816635_hg19_wgEncodeOpenChromDnaseNhekSig.bigWig

Supplementary file Size Download File type/resource
GSM816635_hg19_wgEncodeOpenChromDnaseNhekBaseOverlapSignal.bigWig 898.0 Mb (ftp)(http) BIGWIG
GSM816635_hg19_wgEncodeOpenChromDnaseNhekPk.narrowPeak.gz 2.3 Mb (ftp)(http) NARROWPEAK
GSM816635_hg19_wgEncodeOpenChromDnaseNhekSig.bigWig 3.6 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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