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Sample GSM816632 Query DataSets for GSM816632
Status Public on Oct 14, 2011
Title Duke_DnaseSeq_H1-hESC
Sample type SRA
 
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
controlid: generic_male
labversion: baseAlignCounts.pl v 1,fseq v 1.84, iff_generic_male,p-value cutoff: 0.05
replicate: 1,2
cell organism: human
cell description: embryonic stem cells
cell karyotype: normal
cell lineage: inner cell mass
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
controlid: generic_male
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Submission date Oct 13, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSM1002655
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX100890
BioSample SAMN00739101
Named Annotation GSM816632_hg19_wgEncodeOpenChromDnaseH1hescBaseOverlapSignal.bigWig
Named Annotation GSM816632_hg19_wgEncodeOpenChromDnaseH1hescSig.bigWig

Supplementary file Size Download File type/resource
GSM816632_hg19_wgEncodeOpenChromDnaseH1hescBaseOverlapSignal.bigWig 1007.3 Mb (ftp)(http) BIGWIG
GSM816632_hg19_wgEncodeOpenChromDnaseH1hescPk.narrowPeak.gz 2.2 Mb (ftp)(http) NARROWPEAK
GSM816632_hg19_wgEncodeOpenChromDnaseH1hescSig.bigWig 3.2 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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